Recent Commit Activity

This page lists the most recent commits from all related project repositories.

seandavi/BiocPkgTools

Message: version bump 1.27.9

Author: LiNk-NY

Date: 2025-07-15 18:23:40 UTC


seandavi/BiocPkgTools

Message: update NEWS

Author: LiNk-NY

Date: 2025-07-15 18:22:09 UTC


seandavi/BiocPkgTools

Message: use pkgndep to generate dependency_heatmap

Author: LiNk-NY

Date: 2025-07-15 18:20:53 UTC


seandavi/BiocPkgTools

Message: update formatting of template

Author: LiNk-NY

Date: 2025-07-15 18:20:35 UTC


seandavi/BiocPkgTools

Message: update title

Author: LiNk-NY

Date: 2025-07-15 18:20:01 UTC


waldronlab/bedbaser

Message: Remove devel in action

Author: Wokaty

Date: 2025-07-15 14:26:38 UTC


waldronlab/bedbaser

Message: Fix R versions in action

Author: Wokaty

Date: 2025-07-15 14:10:16 UTC


waldronlab/bedbaser

Message: Fix action

Author: Wokaty

Date: 2025-07-15 05:59:32 UTC


waldronlab/bedbaser

Message: Add release to action

Author: Wokaty

Date: 2025-07-15 05:51:31 UTC


waldronlab/bedbaser

Message: Bump version to 1.1.1

Author: Wokaty

Date: 2025-07-15 05:06:35 UTC


Bioconductor/RaggedExperiment

Message: version bump 1.33.7

Author: LiNk-NY

Date: 2025-07-10 18:19:28 UTC


Bioconductor/RaggedExperiment

Message: roxygen package Rd update

Author: LiNk-NY

Date: 2025-07-10 18:19:22 UTC


Bioconductor/RaggedExperiment

Message: move chunk options to code chunk body

Author: LiNk-NY

Date: 2025-07-10 18:19:09 UTC


Bioconductor/RaggedExperiment

Message: version bump 1.33.6

Author: LiNk-NY

Date: 2025-07-10 17:55:39 UTC


Bioconductor/RaggedExperiment

Message: remove long link

Author: LiNk-NY

Date: 2025-07-10 17:55:27 UTC


waldronlab/OmicsMLRepoData

Message: cBioPortal figures

Author: Sehyun Oh

Date: 2025-07-10 13:38:07 UTC


waldronlab/OmicsMLRepoData

Message: new/updated scripts for cBioPortal figures

Author: Sehyun Oh

Date: 2025-07-10 13:37:36 UTC


waldronlab/OmicsMLRepoData

Message: latest version of cMD metadata

Author: Sehyun Oh

Date: 2025-07-10 13:36:56 UTC


waldronlab/OmicsMLRepoData

Message: latest cBioPortalData merging schema

Author: Sehyun Oh

Date: 2025-07-10 13:36:38 UTC


waldronlab/OmicsMLRepoData

Message: update cBioPortalData ETL scripts

Author: Sehyun Oh

Date: 2025-07-10 13:35:51 UTC


bd4everyone/u24Project

Message: Create jekyll-gh-pages.yml

Author: bd4everyone

Date: 2025-07-08 17:37:10 UTC


bd4everyone/u24Project

Message: Delete docs directory

Author: bd4everyone

Date: 2025-07-08 17:28:57 UTC


bd4everyone/u24Project

Message: Create empty

Author: bd4everyone

Date: 2025-07-08 17:28:33 UTC


bd4everyone/u24Project

Message: Update index.md

Author: bd4everyone

Date: 2025-07-08 17:07:17 UTC


bd4everyone/u24Project

Message: Update index.md

Author: bd4everyone

Date: 2025-07-08 17:06:54 UTC


waldronlab/XeniumIO

Message: version bump 1.1.3

Author: LiNk-NY

Date: 2025-07-03 20:58:11 UTC


waldronlab/XeniumIO

Message: remove rtype arg from bfcdownload

Author: LiNk-NY

Date: 2025-07-03 20:58:09 UTC


waldronlab/cBioPortalData

Message: version bump 2.21.4

Author: LiNk-NY

Date: 2025-07-02 20:34:20 UTC


waldronlab/cBioPortalData

Message: bump login action

Author: LiNk-NY

Date: 2025-07-02 20:32:28 UTC


waldronlab/cBioPortalData

Message: update CRAN binaries URL in Dockerfile

Author: LiNk-NY

Date: 2025-07-02 20:32:08 UTC


waldronlab/cBioPortalData

Message: clean up links in vignette

Author: LiNk-NY

Date: 2025-07-02 20:31:44 UTC


waldronlab/cBioPortalData

Message: clean up references in vignette

Author: LiNk-NY

Date: 2025-07-02 20:31:29 UTC


waldronlab/MultiAssayWorkshop

Message: add concurrency limits

Author: LiNk-NY

Date: 2025-07-02 17:44:25 UTC


waldronlab/MultiAssayWorkshop

Message: use multiline sep

Author: LiNk-NY

Date: 2025-07-02 16:18:27 UTC


waldronlab/TCGAutils

Message: bump version 1.29.5

Author: LiNk-NY

Date: 2025-07-02 16:15:08 UTC


waldronlab/TCGAutils

Message: import genome and genome<- from Seqinfo

Author: LiNk-NY

Date: 2025-07-02 16:10:13 UTC


waldronlab/TCGAutils

Message: add GenomeInfoDb to vignette

Author: LiNk-NY

Date: 2025-07-02 16:09:54 UTC


waldronlab/MultiAssayWorkshop

Message: version bump 3.21.4

Author: LiNk-NY

Date: 2025-07-02 16:01:21 UTC


waldronlab/MultiAssayWorkshop

Message: move Date close to Version

Author: LiNk-NY

Date: 2025-07-02 16:00:37 UTC


waldronlab/MultiAssayWorkshop

Message: rename longFormat to longForm

Author: LiNk-NY

Date: 2025-07-02 15:52:39 UTC


waldronlab/TCGAutils

Message: version bump 1.29.4

Author: LiNk-NY

Date: 2025-07-02 15:24:46 UTC


waldronlab/TCGAutils

Message: add package argument to lifeCycle

Author: LiNk-NY

Date: 2025-07-02 15:24:44 UTC


Bioconductor/AnnotationHub

Message: AnnotationHub 3.99.6: Add Seqinfo to Suggests

Author: Hervé Pagès

Date: 2025-06-20 23:18:03 UTC


nih-cfde/programets

Message: collapse, if multiple categores/descriptions

Author: David Mayer

Date: 2025-06-20 15:13:08 UTC


Bioconductor/SparseArray

Message: add sticker (by Charlotte) to README.md

Author: Hervé Pagès

Date: 2025-06-18 16:19:07 UTC


Bioconductor/BiocParallel

Message: Enable bpworkers<- calls on SerialParam (no-op) with user message

Author: LiNk-NY

Date: 2025-06-18 14:56:30 UTC


waldronlab/SingleCellMultiModal

Message: version bump 1.21.3

Author: LiNk-NY

Date: 2025-06-12 16:44:59 UTC


waldronlab/SingleCellMultiModal

Message: update vignette authors

Author: LiNk-NY

Date: 2025-06-12 16:44:54 UTC


Bioconductor/BiocParallel

Message: Transfer maintainership to Jiefei Wang

Author: Jiefei Wang

Date: 2025-06-12 02:39:17 UTC


shbrief/OmicsMLRepoR

Message: Merge branch 'devel' of github.com:shbrief/OmicsMLRepoR into devel

Author: Sehyun Oh

Date: 2025-06-07 01:27:04 UTC


shbrief/OmicsMLRepoR

Message: remove wrong comment

Author: Sehyun Oh

Date: 2025-06-06 20:08:20 UTC


shbrief/OmicsMLRepoR

Message: version bump

Author: Sehyun Oh

Date: 2025-06-06 19:57:39 UTC


shbrief/OmicsMLRepoR

Message: additional documentation

Author: Sehyun Oh

Date: 2025-06-06 19:57:28 UTC


shbrief/OmicsMLRepoR

Message: new version of cBioPortal harmonized metadata

Author: Sehyun Oh

Date: 2025-06-06 19:57:14 UTC


Bioconductor/BiocParallel

Message: version bump 1.43.3

Author: LiNk-NY

Date: 2025-05-28 18:00:44 UTC


Bioconductor/BiocParallel

Message: convert Rnw vignettes to Rmd (#278)

Author: Marcel Ramos Pérez

Date: 2025-05-28 18:00:02 UTC


Bioconductor/S4Arrays

Message: S4Arrays 1.9.1

Author: Hervé Pagès

Date: 2025-05-27 20:15:38 UTC


nih-cfde/programets

Message: Merge pull request #14 from seandavi/5-collect-grant-details-for-all-cfde-projects

Author: Sean Davis

Date: 2025-05-25 11:32:19 UTC


nih-cfde/programets

Message: add tryCatch for api errors

Author: David Mayer

Date: 2025-05-23 13:48:09 UTC


nih-cfde/programets

Message: document additional project infomation returns

Author: David Mayer

Date: 2025-05-23 13:41:45 UTC


nih-cfde/programets

Message: Depend on R >= 4.1.0 for new pipe

Author: David Mayer

Date: 2025-05-22 23:07:44 UTC


hpages/hovernethelp

Message: update minicluster/JOURNAL_OF_RUNS.txt

Author: Hervé Pagès

Date: 2025-05-22 06:19:09 UTC


Bioconductor/BiocParallel

Message: Merge branch 'Jiefei-Wang-force_load' into devel

Author: Martin Morgan

Date: 2025-05-16 17:35:30 UTC


shbrief/GenomicSuperSignature

Message: fix conflicting versions

Author: Sehyun Oh

Date: 2025-05-16 03:16:21 UTC


Bioconductor/h5mread

Message: h5mread 1.1.1: Update BugReports field

Author: Hervé Pagès

Date: 2025-05-15 18:48:59 UTC


Bioconductor/ExperimentHub

Message: Merge pull request #49 from lshep/httr2

Author: lshep

Date: 2025-05-15 17:05:40 UTC


Bioconductor/AnnotationHub

Message: Merge pull request #61 from lshep/httr2

Author: lshep

Date: 2025-05-15 17:05:30 UTC


Bioconductor/AnnotationHub

Message: Update for correcting docs and test

Author: lshep

Date: 2025-05-15 16:57:41 UTC


Bioconductor/AnnotationHub

Message: Update documentation for additional arguments

Author: lshep

Date: 2025-05-15 14:05:56 UTC


Bioconductor/ExperimentHub

Message: expand on documentation of new arguments

Author: lshep

Date: 2025-05-15 13:53:42 UTC


Bioconductor/BiocFileCache

Message: Update Documentation for new options

Author: lshep

Date: 2025-05-15 13:35:08 UTC


shbrief/GenomicSuperSignature

Message: Merge pull request #29 from shbrief/RELEASE_3_21

Author: Sehyun Oh

Date: 2025-05-15 01:33:18 UTC


Bioconductor/ExperimentHub

Message: Closes #47

Author: lshep

Date: 2025-05-14 15:34:20 UTC


Bioconductor/ExperimentHub

Message: version bump for fixing progression of arguments

Author: lshep

Date: 2025-05-14 15:31:15 UTC


Bioconductor/AnnotationHub

Message: Merge branch 'httr2' of github.com:lshep/AnnotationHub into httr2

Author: lshep

Date: 2025-05-14 15:29:07 UTC


Bioconductor/ExperimentHub

Message: Fix progression of arguments through cache and [[

Author: lshep

Date: 2025-05-14 15:25:22 UTC


Bioconductor/BiocFileCache

Message: Merge pull request #64 from lshep/proxyBug

Author: lshep

Date: 2025-05-14 13:48:58 UTC


Bioconductor/BiocFileCache

Message: Fix version

Author: lshep

Date: 2025-05-14 13:48:29 UTC


Bioconductor/BiocFileCache

Message: Fix bug with using proxy as an argument to functions

Author: lshep

Date: 2025-05-13 17:56:46 UTC


Bioconductor/BiocFileCache

Message: Merge pull request #63 from lshep/progressBar

Author: lshep

Date: 2025-05-13 12:33:48 UTC


waldronlab/oncoKBData

Message: version bump 0.99.7

Author: LiNk-NY

Date: 2025-05-09 21:26:32 UTC


waldronlab/oncoKBData

Message: import DataFrame constructor

Author: LiNk-NY

Date: 2025-05-09 21:26:28 UTC


waldronlab/oncoKBData

Message: version bump 0.99.6

Author: LiNk-NY

Date: 2025-05-09 21:16:21 UTC


waldronlab/oncoKBData

Message: update RoxygenNote

Author: LiNk-NY

Date: 2025-05-09 21:16:16 UTC


waldronlab/oncoKBData

Message: import from S4Vectors

Author: LiNk-NY

Date: 2025-05-09 21:16:08 UTC


waldronlab/HGNCREST

Message: version bump 0.99.6

Author: LiNk-NY

Date: 2025-05-09 16:02:53 UTC


waldronlab/HGNCREST

Message: add .Rbuildignore and update .gitignore

Author: LiNk-NY

Date: 2025-05-09 16:00:09 UTC


waldronlab/HGNCREST

Message: add biocViews to DESCRIPTION

Author: LiNk-NY

Date: 2025-05-09 15:58:59 UTC


waldronlab/TENxIO

Message: version bump 1.11.4

Author: LiNk-NY

Date: 2025-05-08 18:22:10 UTC


waldronlab/GSEABenchmarkeR

Message: version bump 1.29.1

Author: LiNk-NY

Date: 2025-05-08 16:44:31 UTC


shbrief/GenomicSuperSignature

Message: Version bump to trigger rebuilding/propagation of Windows and Mac binaries

Author: Hervé Pagès

Date: 2025-05-08 16:28:02 UTC


waldronlab/CNVRanger

Message: version bump 1.25.4

Author: LiNk-NY

Date: 2025-05-08 16:17:16 UTC


waldronlab/CNVRanger

Message: fix references

Author: LiNk-NY

Date: 2025-05-08 16:17:11 UTC


waldronlab/CNVRanger

Message: version bump 1.25.3

Author: LiNk-NY

Date: 2025-05-08 15:04:54 UTC


drighelli/SpatialExperiment

Message: Merge pull request #167 from lmweber/devel

Author: Lukas Weber

Date: 2025-05-08 14:03:51 UTC


waldronlab/CNVRanger

Message: use bibliography

Author: LiNk-NY

Date: 2025-05-07 23:56:38 UTC


waldronlab/CNVRanger

Message: move png files to man/figures

Author: LiNk-NY

Date: 2025-05-07 22:46:10 UTC


drighelli/SpatialExperiment

Message: version

Author: Lukas Weber

Date: 2025-05-07 22:28:21 UTC


drighelli/SpatialExperiment

Message: update GHA

Author: Lukas Weber

Date: 2025-05-07 22:27:24 UTC


drighelli/SpatialExperiment

Message: update email

Author: Lukas Weber

Date: 2025-05-07 22:26:51 UTC


drighelli/SpatialExperiment

Message: Merge remote-tracking branch 'upstream/devel' into devel

Author: Lukas Weber

Date: 2025-05-07 22:22:38 UTC


waldronlab/GSEABenchmarkeR

Message: Merge pull request #17 from waldronlab/build_site_gha

Author: lgeistlinger

Date: 2025-05-07 22:12:33 UTC


waldronlab/GSEABenchmarkeR

Message: resolve build warning and note

Author: LiNk-NY

Date: 2025-05-07 19:39:59 UTC


waldronlab/GSEABenchmarkeR

Message: use Authors@R

Author: LiNk-NY

Date: 2025-05-07 19:35:46 UTC


waldronlab/GSEABenchmarkeR

Message: add _pkgdown.yml and .github/workflows/pr_check.yml GHA

Author: LiNk-NY

Date: 2025-05-07 19:32:24 UTC


waldronlab/HGNCREST

Message: version bump 0.99.5

Author: LiNk-NY

Date: 2025-05-07 15:57:43 UTC


waldronlab/HGNCREST

Message: .gitignore html

Author: LiNk-NY

Date: 2025-05-07 15:57:38 UTC


waldronlab/VisiumIO

Message: version bump 1.5.6

Author: LiNk-NY

Date: 2025-05-07 15:07:34 UTC


waldronlab/VisiumIO

Message: update .Rbuildignore

Author: LiNk-NY

Date: 2025-05-07 15:07:26 UTC


hpages/hovernethelp

Message: update minicluster/JOURNAL_OF_RUNS.txt

Author: Hervé Pagès

Date: 2025-05-06 23:28:36 UTC


waldronlab/TENxIO

Message: use integrated HTML sessionInfo

Author: LiNk-NY

Date: 2025-05-06 23:17:29 UTC


waldronlab/VisiumIO

Message: version bump 1.5.5

Author: LiNk-NY

Date: 2025-05-06 23:00:43 UTC


waldronlab/VisiumIO

Message: remove HTML from .Rbuildignore

Author: LiNk-NY

Date: 2025-05-06 23:00:32 UTC


waldronlab/VisiumIO

Message: version bump 1.5.4

Author: LiNk-NY

Date: 2025-05-06 22:50:54 UTC


waldronlab/XeniumIO

Message: version bump 1.1.2

Author: LiNk-NY

Date: 2025-05-06 22:23:23 UTC


waldronlab/XeniumIO

Message: update README.md

Author: LiNk-NY

Date: 2025-05-06 22:23:02 UTC


waldronlab/XeniumIO

Message: add expandable sessionInfo in HTML

Author: LiNk-NY

Date: 2025-05-06 22:22:50 UTC


waldronlab/TENxIO

Message: version bump 1.11.3

Author: LiNk-NY

Date: 2025-05-06 21:29:03 UTC


waldronlab/TENxIO

Message: add _pkgdown.yml and .github/workflows/pr_check.yml GHA

Author: LiNk-NY

Date: 2025-05-06 21:27:10 UTC


waldronlab/TENxIO

Message: version bump 1.11.2

Author: LiNk-NY

Date: 2025-05-06 21:25:17 UTC


waldronlab/SingleCellMultiModal

Message: version bump 1.21.2

Author: LiNk-NY

Date: 2025-05-06 20:21:33 UTC


waldronlab/SingleCellMultiModal

Message: add sticker to README.md

Author: LiNk-NY

Date: 2025-05-06 20:21:25 UTC


waldronlab/MultiAssayExperiment

Message: version bump 1.35.3

Author: LiNk-NY

Date: 2025-05-06 15:45:00 UTC


waldronlab/MultiAssayExperiment

Message: update NEWS.md

Author: LiNk-NY

Date: 2025-05-06 15:43:26 UTC


waldronlab/MultiAssayExperiment

Message: defunct longFormat

Author: LiNk-NY

Date: 2025-05-06 15:40:29 UTC


waldronlab/SingleCellMultiModal

Message: version bump 1.21.1

Author: LiNk-NY

Date: 2025-05-05 21:43:20 UTC


waldronlab/curatedTCGAData

Message: version bump 1.31.1

Author: LiNk-NY

Date: 2025-05-05 21:32:41 UTC


waldronlab/curatedTCGAData

Message: update CI in .Rbuildignore

Author: LiNk-NY

Date: 2025-05-05 21:31:52 UTC


waldronlab/curatedTCGAData

Message: add _pkgdown.yml and .github/workflows/pr_check.yml GHA

Author: LiNk-NY

Date: 2025-05-05 21:23:26 UTC


waldronlab/curatedOvarianData

Message: version bump 1.47.2

Author: LiNk-NY

Date: 2025-05-05 20:56:03 UTC


waldronlab/curatedOvarianData

Message: rename CHANGELOG and reformat NEWS.md

Author: LiNk-NY

Date: 2025-05-05 20:55:56 UTC


waldronlab/curatedOvarianData

Message: update .Rbuildignore and .gitignore

Author: LiNk-NY

Date: 2025-05-05 20:55:37 UTC


waldronlab/curatedOvarianData

Message: add R version to fix NOTE

Author: LiNk-NY

Date: 2025-05-05 20:41:13 UTC


waldronlab/curatedOvarianData

Message: fix URL in _pkgdown.yml

Author: LiNk-NY

Date: 2025-05-05 20:41:03 UTC


waldronlab/MultiAssayExperiment

Message: version bump 1.35.2

Author: LiNk-NY

Date: 2025-05-05 17:28:19 UTC


waldronlab/MultiAssayExperiment

Message: update R ver dep

Author: LiNk-NY

Date: 2025-05-05 17:27:07 UTC


Bioconductor/DelayedArray

Message: DelayedArray 0.35.2

Author: Hervé Pagès

Date: 2025-04-18 05:48:41 UTC


Bioconductor/DelayedArray

Message: DelayedArray 0.35.1

Author: Hervé Pagès

Date: 2025-04-17 17:33:44 UTC


Bioconductor/h5mread

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:45:26 UTC


Bioconductor/h5mread

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:45:26 UTC


Bioconductor/SparseArray

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:15:49 UTC


Bioconductor/SparseArray

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:15:49 UTC


Bioconductor/S4Arrays

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:15:41 UTC


Bioconductor/S4Arrays

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 17:15:41 UTC


shbrief/GenomicSuperSignature

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 16:32:36 UTC


shbrief/GenomicSuperSignature

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 16:32:36 UTC


Bioconductor/DelayedArray

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 15:07:19 UTC


Bioconductor/DelayedArray

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 15:07:19 UTC


Bioconductor/HDF5Array

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 14:58:57 UTC


Bioconductor/HDF5Array

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 14:58:57 UTC


Bioconductor/GenomicFiles

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 14:30:56 UTC


Bioconductor/GenomicFiles

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: A Wokaty

Date: 2025-04-15 14:30:56 UTC


waldronlab/curatedTCGAData

Message: bump x.y.z version to odd y following creation of RELEASE_3_21 branch

Author: lshep

Date: 2025-04-15 14:09:57 UTC


waldronlab/curatedTCGAData

Message: bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

Author: lshep

Date: 2025-04-15 14:09:57 UTC


Bioconductor/DelayedArray

Message: update NEWS

Author: Hervé Pagès

Date: 2025-04-15 06:49:59 UTC


Bioconductor/S4Arrays

Message: update NEWS

Author: Hervé Pagès

Date: 2025-04-15 06:41:28 UTC


Bioconductor/SparseArray

Message: update NEWS

Author: Hervé Pagès

Date: 2025-04-15 05:13:09 UTC


Bioconductor/HDF5Array

Message: update NEWS

Author: Hervé Pagès

Date: 2025-04-15 01:35:24 UTC


Bioconductor/HDF5Array

Message: HDF5Array 1.35.17

Author: Hervé Pagès

Date: 2025-04-15 01:12:05 UTC


hpages/hovernethelp

Message: update minicluster/JOURNAL_OF_RUNS.txt

Author: Hervé Pagès

Date: 2025-04-14 17:38:58 UTC


hpages/hovernethelp

Message: infer_batch2.sh now pushes results to inferdata4 volume instead of inferdata3

Author: Hervé Pagès

Date: 2025-04-01 15:41:17 UTC


hpages/hovernethelp

Message: update minicluster/JOURNAL_OF_RUNS.txt

Author: Hervé Pagès

Date: 2025-03-25 18:49:02 UTC


seandavi/BiocBuildDB

Message: Clarify that the package is used to help build a database....

Author: Sean Davis

Date: 2025-03-20 02:00:22 UTC


Bioconductor/HDF5Array

Message: minor edit

Author: Hervé Pagès

Date: 2025-03-19 22:22:56 UTC


Bioconductor/SparseArray

Message: SparseArray 1.7.7

Author: Hervé Pagès

Date: 2025-03-18 20:36:27 UTC


shbrief/curatedMetagenomicDataODM

Message: Update body_site_details

Author: krlong68

Date: 2025-03-18 20:02:13 UTC


seandavi/awesome-cancer-variant-resources

Message: Merge pull request #7 from lgeistlinger/master

Author: Sean Davis

Date: 2025-03-06 23:04:53 UTC


seandavi/awesome-cancer-variant-resources

Message: add AlphaMissense

Author: lgeistlinger

Date: 2025-03-06 22:14:12 UTC


seandavi/refinebioc

Message: Merge pull request #17 from ttriche/patch-1

Author: Sean Davis

Date: 2025-03-04 23:28:32 UTC


Bioconductor/BiocHubsIngestR

Message: Bump version

Author: Alexandru Mahmoud

Date: 2025-02-27 17:00:06 UTC


seandavi/refinebioc

Message: Update README.md

Author: Tim Triche, Jr.

Date: 2025-02-27 16:02:51 UTC


Bioconductor/BiocHubsIngestR

Message: Update part size

Author: Alexandru Mahmoud

Date: 2025-02-27 15:19:15 UTC


Bioconductor/BiocHubsIngestR

Message: Test multi-part upload

Author: Alexandru Mahmoud

Date: 2025-02-26 19:27:57 UTC


seandavi/refinebioc

Message: try fixing email on gh actions

Author: Sean Davis

Date: 2025-02-21 04:03:51 UTC


seandavi/refinebioc

Message: replace knitr with quarto

Author: Sean Davis

Date: 2025-02-21 03:41:49 UTC


seandavi/refinebioc

Message: fix vignette build

Author: Sean Davis

Date: 2025-02-21 03:37:35 UTC


shbrief/curatedMetagenomicDataODM

Message: Add dictionaries for "ancestry_details", "body_site_details", and "disease_details"; add Svetlana to curator list

Author: krlong68

Date: 2025-02-18 19:09:29 UTC


seandavi/state-cancer-profile-scraper

Message: Clarify readme intro

Author: Sean Davis

Date: 2025-02-11 00:18:39 UTC


seandavi/state-cancer-profile-scraper

Message: Add update frequency

Author: Sean Davis

Date: 2025-02-10 23:02:05 UTC


seandavi/state-cancer-profile-scraper

Message: Update README.md

Author: Sean Davis

Date: 2025-02-10 22:58:20 UTC


seandavi/state-cancer-profile-scraper

Message: Add clear download link.

Author: Sean Davis

Date: 2025-02-10 22:46:07 UTC


seandavi/state-cancer-profile-scraper

Message: update ignores

Author: Sean Davis

Date: 2025-02-10 22:41:38 UTC


Bioconductor/S4Arrays

Message: S4Arrays 1.7.3

Author: Hervé Pagès

Date: 2025-02-08 02:02:59 UTC


shbrief/curatedMetagenomicDataODM

Message: Add non-NCIT terms to "treatment" dictionary; create .owl files for "probing_pocket_depth", "smoker", and "feces_phenotype" terms

Author: krlong68

Date: 2025-02-07 13:12:20 UTC


shbrief/curatedMetagenomicDataODM

Message: Adjust SNOMED prefixes to create working links

Author: krlong68

Date: 2025-02-05 10:04:46 UTC


shbrief/curatedMetagenomicDataODM

Message: Convert biomarker EFO terms to OBA; Fix IRI when subsetting EFO disease terms; Add tumor_staging_tnm dictionary

Author: krlong68

Date: 2025-01-30 14:27:52 UTC


Bioconductor/BiocHubsIngestR

Message: Tweaks

Author: Alexandru Mahmoud

Date: 2025-01-23 19:29:26 UTC


Bioconductor/h5mread

Message: h5mread 0.99.4

Author: Hervé Pagès

Date: 2025-01-21 21:44:07 UTC


Bioconductor/h5mread

Message: minor edit to vignette

Author: Hervé Pagès

Date: 2025-01-14 22:39:31 UTC


Bioconductor/BiocHubsIngestR

Message: Remove License added by tempalte

Author: Alexandru Mahmoud

Date: 2025-01-10 20:59:10 UTC


waldronlab/PublicDataResources

Message: set actions/cache to v4

Author: Marcel Ramos Pérez

Date: 2025-01-06 21:26:21 UTC


waldronlab/enrichOmics

Message: set actions/cache to v4

Author: Marcel Ramos Pérez

Date: 2025-01-06 21:24:40 UTC


vjcitn/xenLite

Message: Merge pull request #4 from vjcitn/devel

Author: Vince Carey

Date: 2024-11-27 11:38:02 UTC


vjcitn/xenLite

Message: Merge pull request #3 from vjcitn/vincedev

Author: Vince Carey

Date: 2024-11-27 11:36:00 UTC


waldronlab/HGNChelper

Message: update NEWS

Author: Levi Waldron

Date: 2024-11-16 16:08:23 UTC


waldronlab/HGNChelper

Message: Bump version, update maps, suppress warning in splitstachshape::cSplit, update HGNC URL in documentation

Author: Levi Waldron

Date: 2024-11-16 15:53:39 UTC


waldronlab/HGNChelper

Message: update url, refers to #1

Author: LiNk-NY

Date: 2024-11-11 15:02:53 UTC


vjcitn/xenLite

Message: Merge pull request #2 from vjcitn/RELEASE_3_20

Author: Vince Carey

Date: 2024-10-31 05:07:15 UTC


vjcitn/YESCDS

Message: update the pkgdown site

Author: vjcitn

Date: 2024-10-30 12:26:08 UTC


vjcitn/xenLite

Message: bump x.y.z version to odd y following creation of RELEASE_3_20 branch

Author: J Wokaty

Date: 2024-10-29 15:33:39 UTC


vjcitn/xenLite

Message: bump x.y.z version to even y prior to creation of RELEASE_3_20 branch

Author: J Wokaty

Date: 2024-10-29 15:33:39 UTC


Bioconductor/GenomicFiles

Message: bump x.y.z version to odd y following creation of RELEASE_3_20 branch

Author: J Wokaty

Date: 2024-10-29 13:51:52 UTC


Bioconductor/GenomicFiles

Message: bump x.y.z version to even y prior to creation of RELEASE_3_20 branch

Author: J Wokaty

Date: 2024-10-29 13:51:52 UTC


vjcitn/YESCDS

Message: passing check

Author: vjcitn

Date: 2024-08-02 14:05:14 UTC


vjcitn/YESCDS

Message: moving along, dropping mut_stuff for now

Author: vjcitn

Date: 2024-08-02 11:34:25 UTC


vjcitn/YESCDS

Message: update compressed data

Author: vjcitn

Date: 2024-08-02 11:24:15 UTC


vjcitn/YESCDS

Message: adding hcc code causing problem with devtools::document?

Author: vjcitn

Date: 2024-08-02 09:50:51 UTC


ccb-hms/scConform

Message: change param names and add ctb

Author: DanielaCorbetta

Date: 2024-07-25 15:02:51 UTC


ccb-hms/scConform

Message: add pkgdown css

Author: DanielaCorbetta

Date: 2024-07-02 20:17:11 UTC


ccb-hms/scConform

Message: Merge branch 'main' of https://github.com/ccb-hms/scConform

Author: DanielaCorbetta

Date: 2024-06-24 19:10:27 UTC


ccb-hms/scConform

Message: rm import foreach

Author: DanielaCorbetta

Date: 2024-06-24 19:10:25 UTC


ccb-hms/scConform

Message: Update check-bioc.yml

Author: Daniela Corbetta

Date: 2024-06-24 16:49:55 UTC


waldronlab/HGNChelper

Message: version bump

Author: Levi Waldron

Date: 2024-05-18 04:16:43 UTC


waldronlab/HGNChelper

Message: Documentation syntax

Author: Levi Waldron

Date: 2024-05-18 04:16:35 UTC


Bioconductor/GenomicFiles

Message: bump x.y.z version to odd y following creation of RELEASE_3_19 branch

Author: J Wokaty

Date: 2024-04-30 14:36:19 UTC


seandavi/BiocBuildDB

Message: Update process_new_build_reports.yaml

Author: Sean Davis

Date: 2024-02-29 18:07:08 UTC


seandavi/BiocBuildDB

Message: Update process_new_build_reports.yaml

Author: Sean Davis

Date: 2024-02-29 18:04:58 UTC


seandavi/BiocBuildDB

Message: Update process_new_build_reports.yaml

Author: Sean Davis

Date: 2024-02-29 17:59:24 UTC


seandavi/BiocBuildDB

Message: Update process_new_build_reports.yaml

Author: Sean Davis

Date: 2024-02-28 23:23:34 UTC


seandavi/awesome-cancer-variant-resources

Message: Merge pull request #6 from CompOnco/master

Author: Sean Davis

Date: 2023-10-24 15:18:04 UTC


seandavi/awesome-cancer-variant-resources

Message: Update README.md

Author: Aedin Culhane

Date: 2023-10-24 15:04:59 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: standardize barcodes for curation files

Author: LiNK-NY

Date: 2023-05-16 22:14:53 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: use file instead of path

Author: LiNK-NY

Date: 2023-05-16 22:14:30 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: add version 2.1.1 section

Author: LiNK-NY

Date: 2023-05-02 19:14:16 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: allow flexible runs for only colData

Author: LiNK-NY

Date: 2023-05-02 19:10:57 UTC


waldronlab/MultiAssayExperiment.TCGA

Message: minor updates

Author: LiNK-NY

Date: 2023-05-02 19:09:53 UTC


vjcitn/BiocOncoTK

Message: Merge branch 'master' of https://github.com/vjcitn/BiocOncoTK

Author: vjcitn

Date: 2023-02-05 20:26:03 UTC


vjcitn/BiocOncoTK

Message: add the Dockerfile for Dockstore

Author: vjcitn

Date: 2023-02-05 20:25:32 UTC


vjcitn/BiocOncoTK

Message: updating docker reference

Author: vjcitn

Date: 2023-02-05 18:16:52 UTC


vjcitn/BiocOncoTK

Message: adding test parameter file

Author: vjcitn

Date: 2023-02-05 13:58:20 UTC


vjcitn/BiocOncoTK

Message: fix wdl

Author: vjcitn

Date: 2023-02-05 13:42:51 UTC


waldronlab/PublicDataResources

Message: magrittr import

Author: lwaldron

Date: 2021-04-29 10:43:54 UTC


waldronlab/PublicDataResources

Message: RELEASE_3_12, chunk names

Author: lwaldron

Date: 2021-04-29 10:22:10 UTC


waldronlab/PublicDataResources

Message: use release, names for main sections

Author: lwaldron

Date: 2021-04-29 09:58:41 UTC


vjcitn/TxRegInfra2

Message: revise vignette to use $run

Author: Vince Carey

Date: 2020-12-31 01:01:51 UTC


vjcitn/TxRegInfra2

Message: synch with gh-pages

Author: Vince Carey

Date: 2020-12-26 02:26:54 UTC


vjcitn/TxRegInfra2

Message: update content

Author: Vince Carey

Date: 2020-12-26 02:01:30 UTC


vjcitn/TxRegInfra2

Message: Merge branch 'main' into gh-pages -- bring in README.md

Author: Vince Carey

Date: 2020-12-26 01:41:10 UTC


vjcitn/TxRegInfra2

Message: update README

Author: Vince Carey

Date: 2020-12-26 01:40:38 UTC


waldronlab/enrichOmics

Message: Merge branch 'master' of https://github.com/waldronlab/enrichOmics

Author: lgeistlinger

Date: 2020-09-25 21:15:25 UTC


waldronlab/enrichOmics

Message: post-conference updates

Author: lgeistlinger

Date: 2020-09-25 21:14:58 UTC


waldronlab/enrichOmics

Message: Merge pull request #11 from waldronlab/lwaldron-patch-1

Author: lgeistlinger

Date: 2020-07-28 17:55:44 UTC


waldronlab/enrichOmics

Message: Use bioconductor/bioconductor_docker:bioc2020.1

Author: Levi Waldron

Date: 2020-07-28 17:48:35 UTC


waldronlab/PublicDataResources

Message: add link to slides

Author: Levi Waldron

Date: 2020-07-28 07:42:23 UTC


seandavi/awesome-cancer-variant-resources

Message: Merge pull request #3 from MuhammedHasan/patch-1

Author: Sean Davis

Date: 2019-03-13 12:05:47 UTC